Results

Disclaimer:

The test results shown here are based on preliminary data and code which still is under development.
F-UJI is rapidly evolving and not yet available in a productive environment.

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Assessment Results (saved at 2022-06-07 21:51:08):

Evaluated Resource:

Dataset Dental research data availability and quality according to FAIR principles

{JSON} New

FAIR level:	advanced
Resource PID/URL:	10.5281/zenodo.6460190
DataCite support:	enabled
Metric Version:	metrics_v0.4
Metric Specification:	https://doi.org/10.5281/zenodo.4081213
Software version:	1.4.9b
Download saved assessment results:	{JSON}
Save and share assessment results:	Saved assessments: 2022-06-07 (1.4.9b)

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Summary:

	Score earned:	Fair level:
Findable:	7 of 7	advanced
Accessible:	3 of 3	advanced
Interoperable:	3 of 4	moderate
Reusable:	6 of 10	moderate

Report:

Findable

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

{
    "guid": "10.5281\/zenodo.6460190",
    "guid_scheme": "doi"
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-F1-01D-1

Identifier is resolvable and follows a defined unique identifier syntax (IRI, URL)

FsF-F1-01D-2

Identifier is not resolvable but follows an UUID or HASH type syntax

Debug messages:

Level:	Message:
INFO	Using idutils schemes
SUCCESS	Unique identifier schemes found ['doi', 'handle']
INFO	Finalized unique identifier scheme - doi

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

{
    "pid": "http:\/\/doi.org\/10.5281\/zenodo.6460190",
    "pid_scheme": "doi",
    "resolvable_status": true,
    "resolved_url": "https:\/\/zenodo.org\/record\/6460190"
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-F1-02D-1

Identifier follows a defined persistent identifier syntax

0.5

FsF-F1-02D-2

Persistent identifier is resolvable

0.5

Debug messages:

Level:	Message:
INFO	PID schemes-based assessment supported by the assessment service - ['ark', 'arxiv', 'bioproject', 'biosample', 'doi', 'ensembl', 'genome', 'gnd', 'handle', 'lsid', 'pmid', 'pmcid', 'purl', 'refseq', 'sra', 'uniprot', 'urn']
INFO	Retrieving page -: http://doi.org/10.5281/zenodo.6460190 as text/html, application/xhtml+xml, application/xml;q=0.5, text/xml;q=0.5, application/rdf+xml;q=0.5
INFO	Object identifier active (status code = 200)
SUCCESS	Persistence identifier scheme -: doi

FAIR level:

3 of 3

advanced

Score:

2 of 2

Output:

{
    "core_metadata_found": {
        "creator": [
            "Sergio E Uribe",
            "Ahmad Sofi-Mahmudi",
            "Eero Raittio",
            "Ilze Maldupa",
            "Baiba Vilne"
        ],
        "keywords": [
            "FAIR",
            "Dentistry",
            "Dental publications",
            "Deep Learning\/Machine Learning",
            "Dental informatics\/bioinformatics",
            "Electronic dental records",
            "Outcomes research"
        ],
        "object_identifier": "https:\/\/doi.org\/10.5281\/zenodo.6460190",
        "object_type": "Dataset",
        "publication_date": "2022-04-14",
        "publisher": "Zenodo",
        "summary": "<p>This dataset contains open access publications in EPMC dental journals from 2016 to 2021 and 500 non-open access dental publications.&nbsp;We evaluated the level of compliance with the FAIR principles. The original dataset and codebook are attached.&nbsp;<\/p>",
        "title": "Dataset Dental research data availability and quality according to FAIR principles"
    },
    "core_metadata_source": [
        [
            "Schema.org JSON-LD (Embedded)",
            "embedded"
        ],
        [
            "Embedded DublinCore",
            "embedded"
        ],
        [
            "Embedded Microdata",
            "embedded"
        ],
        [
            "Embedded OpenGraph",
            "embedded"
        ],
        [
            "Schema.org JSON-LD (Negotiated)",
            "negotiated"
        ],
        [
            "Datacite Search",
            "negotiated"
        ]
    ],
    "core_metadata_status": "all metadata"
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-F2-01M-1

Metadata has been made available via common web methods

0.5

Metadata is embedded in the landing page XHTML/HTML code

Metadata is accessible through content negotiation

Metadata is accessible via typed links

Metadata is accessible via signposting links

FsF-F2-01M-2

Core data citation metadata is available

0.5

FsF-F2-01M-3

Core descriptive metadata is available

Debug messages:

Level:	Message:
INFO	Trying to identify some EMBEDDED metadata in content retrieved during PID verification process (FsF-F1-02D)
INFO	Content negotiation accept=text/html, application/xhtml+xml, application/xml;q=0.5, text/xml;q=0.5, application/rdf+xml;q=0.5, status=200
INFO	Using Cached response content
INFO	Starting to identify EMBEDDED metadata at -: https://zenodo.org/record/6460190
INFO	Trying to retrieve schema.org JSON-LD metadata from html page
INFO	Trying to extract schema.org JSON-LD metadata from -: Schema.org JSON-LD (Embedded)
INFO	Found schema.org JSON-LD which seems to be valid, based on the given context type -:Dataset
SUCCESS	Found schema.org JSON-LD metadata in html page -: dict_keys(['title', 'object_type', 'publication_date', 'creator', 'license', 'summary', 'keywords', 'object_identifier', 'object_content_identifier'])
INFO	Trying to retrieve Dublin Core metadata from html page
SUCCESS	Found DublinCore metadata -: dict_keys(['summary'])
INFO	Trying to retrieve Microdata metadata from html page
INFO	Trying to extract Microdata metadata from -: Embedded Microdata
SUCCESS	Found microdata metadata -: dict_keys(['object_type'])
INFO	Trying to retrieve RDFa metadata from html page
INFO	RDFa metadata parsing exception, probably no RDFa embedded in HTML -:'str' object has no attribute 'decode'
INFO	Trying to retrieve OpenGraph metadata from html page
INFO	Found OpenGraph metadata-: dict_keys(['title', 'object_identifier', 'summary', 'publisher'])
INFO	Could not identify OpenGraph metadata
SUCCESS	Found OpenGraph metadata -: dict_keys(['title', 'object_identifier', 'summary', 'publisher'])
INFO	Trying to identify Typed Links to data items in html page
INFO	Starting to identify EXTERNAL metadata through content negotiation or typed links
INFO	Trying to retrieve XML metadata through content negotiation from URL -: http://doi.org/10.5281/zenodo.6460190
INFO	Retrieving page -: https://zenodo.org/record/6460190 as application/xml, text/xml;q=0.5
INFO	Content negotiation accept=application/xml, text/xml;q=0.5, status=200
INFO	Using Cached response content
INFO	Trying to extract/parse XML metadata from URL -: Generic XML (Negotiated)
INFO	Expected XML but content negotiation responded -: html
INFO	Could not identify metadata properties in XML
INFO	Trying to retrieve schema.org JSON-LD metadata through content negotiation from URL -: http://doi.org/10.5281/zenodo.6460190
INFO	Retrieving page -: http://doi.org/10.5281/zenodo.6460190 as application/vnd.schemaorg.ld+json, application/ld+json
INFO	Content negotiation accept=application/vnd.schemaorg.ld+json, application/ld+json, status=200
INFO	Using Cached response content
INFO	Trying to extract schema.org JSON-LD metadata from -: Schema.org JSON-LD (Negotiated)
INFO	Found schema.org JSON-LD which seems to be valid, based on the given context type -:Dataset
SUCCESS	Found Schema.org metadata through content negotiation-: dict_keys(['title', 'object_type', 'publication_date', 'creator', 'creator_first', 'creator_last', 'publisher', 'license', 'summary', 'keywords', 'object_identifier', 'related_resources'])
INFO	Trying to retrieve XML metadata through content negotiation from URL -: https://zenodo.org/record/6460190
INFO	Retrieving page -: https://zenodo.org/record/6460190 as application/xml, text/xml;q=0.5
INFO	Content negotiation accept=application/xml, text/xml;q=0.5, status=200
INFO	Using Cached response content
INFO	Trying to extract/parse XML metadata from URL -: Generic XML (Negotiated)
INFO	Expected XML but content negotiation responded -: html
INFO	Could not identify metadata properties in XML
INFO	Trying to retrieve schema.org JSON-LD metadata through content negotiation from URL -: https://zenodo.org/record/6460190
INFO	Retrieving page -: https://zenodo.org/record/6460190 as application/vnd.schemaorg.ld+json, application/ld+json
INFO	Content negotiation accept=application/vnd.schemaorg.ld+json, application/ld+json, status=200
INFO	Using Cached response content
INFO	Trying to extract schema.org JSON-LD metadata from -: Schema.org JSON-LD (Negotiated)
INFO	Found JSON-LD schema.org but record is not of type "Dataset" based on context -: None
INFO	Schema.org metadata through content negotiation UNAVAILABLE
INFO	Trying to retrieve RDF metadata through content negotiation from URL -: https://zenodo.org/record/6460190
INFO	Retrieving page -: https://zenodo.org/record/6460190 as text/turtle, application/turtle, application/x-turtle;q=0.8, application/rdf+xml, text/n3;q=0.9, text/rdf+n3;q=0.9,application/ld+json
INFO	Content negotiation accept=text/turtle, application/turtle, application/x-turtle;q=0.8, application/rdf+xml, text/n3;q=0.9, text/rdf+n3;q=0.9,application/ld+json, status=200
INFO	Using Cached response content
INFO	Seems to be HTML not RDF, therefore skipped parsing RDF from -: https://zenodo.org/record/6460190
INFO	Linked Data metadata UNAVAILABLE
INFO	Trying to retrieve datacite metadata
INFO	Retrieving page -: http://doi.org/10.5281/zenodo.6460190 as application/vnd.datacite.datacite+json
INFO	Content negotiation accept=application/vnd.datacite.datacite+json, status=200
INFO	Using Cached response content
SUCCESS	Found Datacite metadata -: dict_keys(['object_identifier', 'object_type', 'creator', 'creator_first', 'creator_last', 'publisher', 'title', 'keywords', 'publication_date', 'license', 'summary', 'related_resources', 'datacite_client', 'access_level'])
INFO	Guessed XML retrieval failed for -: https://zenodo.org/record/6460190.xml
INFO	Type of object described by the metadata -: Dataset
INFO	Testing for required core descriptive metadata elements -: ['creator', 'title', 'publisher', 'publication_date', 'summary', 'keywords', 'object_identifier', 'object_type']
SUCCESS	Found required core descriptive metadata elements -: ['creator', 'title', 'publisher', 'publication_date', 'summary', 'keywords', 'object_identifier', 'object_type']

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

{
    "object_content_identifier_included": [
        {
            "content_identifier_active": true,
            "content_identifier_included": {
                "header_content_length": "27423",
                "header_content_type": "application\/octet-stream, application\/octet-stream",
                "type": "zip",
                "url": "https:\/\/zenodo.org\/api\/files\/78079f6e-2c8a-400d-b51f-fbd554d73a6e\/Figs.zip"
            }
        }
    ]
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-F3-01M-1

Metadata contains data content related information (file name, size, type)

0.5

FsF-F3-01M-2

Metadata contains a PID or URL which indicates the location of the downloadable data content

0.5

Debug messages:

Level:	Message:
INFO	Found data links in Schema.org metadata -: [{'url': 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/00-README.txt', 'type': 'txt'}, {'url': 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/01-analysis-script-fairness-dental-publications-2016-2021.Rmd', 'type': 'rmd'}, {'url': 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/02-data-dental-publications-fairness-2016-2021.csv', 'type': 'csv'}, {'url': 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/03-codebook-dental-publications-fairness.csv', 'type': 'csv'}, {'url': 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/Figs.zip', 'type': 'zip'}]
SUCCESS	Number of object content identifier found -: 5
INFO	The total number of object (content) specified is above threshold, so use the first -: 5 content identifiers
WARNING	Content type given in metadata differs from content type given in Header response -: (txt) vs. (text/plain)
WARNING	Content type given in metadata differs from content type given in Header response -: (rmd) vs. (application/octet-stream, application/octet-stream)
WARNING	Content type given in metadata differs from content type given in Header response -: (csv) vs. (text/plain)
WARNING	Content type given in metadata differs from content type given in Header response -: (csv) vs. (text/plain)
WARNING	Content type given in metadata differs from content type given in Header response -: (zip) vs. (application/octet-stream, application/octet-stream)

FAIR level:

3 of 3

advanced

Score:

2 of 2

Output:

{
    "search_mechanisms": [
        {
            "mechanism": "structured data",
            "mechanism_info": [
                "Schema.org JSON-LD (Negotiated)",
                "Embedded DublinCore",
                "Schema.org JSON-LD (Embedded)"
            ]
        },
        {
            "mechanism": "metadata registry",
            "mechanism_info": [
                "Datacite Search",
                "DataCite Registry"
            ]
        }
    ]
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-F4-01M-1

Metadata is given in a way major search engines can ingest it for their catalogues (JSON-LD, Dublin Core, RDFa)

FsF-F4-01M-2

Metadata is registered in major research data registries (DataCite)

Debug messages:

Level:	Message:
INFO	Supported tests of metadata retrieval/extraction -: 'Embedded DublinCore', 'Embedded OpenGraph', 'Schema.org JSON-LD (Embedded)', 'Schema.org JSON-LD (Negotiated)', 'Datacite Search', 'Typed Links', 'Signposting Typed Links', 'RDF-based Typed Links', 'Linked Data (RDF)', 'B2FIND Metadata Aggregator', 'Guessed XML Link', 'Generic XML (Negotiated)', 'Embedded RDFa', 'Embedded Microdata', 'OAI-ORE'
INFO	Metadata found through - structured data
INFO	Querying DataCite API for -:10.5281/zenodo.6460190
INFO	Found identifier in DataCite catalogue -:10.5281/zenodo.6460190
INFO	Dataset already found in registry therefore skipping Google Dataset Search Cache query
INFO	Dataset already found in registry therefore skipping Mendeley Data query
INFO	Metadata found through - metadata registry

Accessible

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

{
    "access_details": {
        "access_condition": "info:eu-repo\/semantics\/openAccess"
    },
    "access_level": "public"
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-A1-01M-1

Information about access restrictions or rights can be identified in metadata

0.5

FsF-A1-01M-2

Data access information is machine readable

0.5

FsF-A1-01M-3

Data access information is indicated by (not machine readable) standard terms

Debug messages:

Level:	Message:
INFO	Access information specified -: https://creativecommons.org/licenses/by/4.0/legalcode
INFO	Verify URL through SPDX registry -: https://creativecommons.org/licenses/by/4.0/legalcode
INFO	Found SPDX license representation -: http://spdx.org/licenses/CC-BY-4.0.json
WARNING	Access condition looks like license, therefore the following is ignored -: https://creativecommons.org/licenses/by/4.0/legalcode
INFO	Access information specified -: info:eu-repo/semantics/openAccess
INFO	Verify name through SPDX registry -: info:eu-repo/semantics/openAccess
INFO	Standardized actionable access level recognized as -:public
INFO	Found access rights information in dedicated metadata element
SUCCESS	Access level to data could successfully be determined -: public

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

{
    "standard_data_protocol": {
        "https": "Hyper Text Transfer Protocol Secure"
    }
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-A1-03D-1

Metadata includes a resolvable link to data based on standardized web communication protocols.

Debug messages:

Level:	Message:
SUCCESS	Standard protocol for access to data object found: https

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

{
    "standard_metadata_protocol": {
        "https": "Hyper Text Transfer Protocol Secure"
    }
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-A1-02M-1

Landing page link is based on standardized web communication protocols.

Debug messages:

Level:	Message:
SUCCESS	Standard protocol for access to metadata found -: https

Interoperable

FAIR level:

3 of 3

advanced

Score:

2 of 2

Output:

[
    {
        "is_metadata_found": true,
        "serialization_format": "JSON-LD",
        "source": "structured_data"
    },
    {
        "is_metadata_found": true,
        "serialization_format": "JSON-LD",
        "source": "content_negotiate"
    }
]

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-I1-01M-1

Parsable, structured metadata (JSON-LD, RDFa) is embedded in the landing page XHTML/HTML code

FsF-I1-01M-2

Parsable, graph data (RDF, JSON-LD) is accessible through content negotiation, typed links or sparql endpoint

Debug messages:

Level:	Message:
INFO	Check of structured data (RDF serialization) embedded in the data page
INFO	JSON-LD (schema.org) serialization found in the data page - JSON-LD
SUCCESS	Found structured data (RDF serialization) in the data page
INFO	Check if RDF-based typed link included
INFO	NO RDF-based typed link found
INFO	Check if RDF metadata available through content negotiation
INFO	JSON-LD graph retrieved through content negotiation, content type - JSON-LD
SUCCESS	Found RDF content through content negotiation or typed links
WARNING	NO SPARQL endpoint found through re3data based on the object URI provided

FAIR level:

1 of 3

initial

Score:

0 of 1

Output:

[]

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-I1-02M-1

Vocabulary namespace URIs can be identified in metadata

FsF-I1-02M-2

Namespaces of known semantic resources can be identified in metadata

Debug messages:

Level:	Message:
INFO	Number of vocabulary namespaces extracted from all RDF-based metadata -: 8
INFO	Default vocabulary namespace(s) excluded -: ['http://ogp.me/ns', 'http://schema.org', 'http://purl.org/dc/elements/1.1']
INFO	Check the remaining namespace(s) exists in LOD -: []
WARNING	NO vocabulary namespace match is found
WARNING	Vocabulary namespace (s) or URIs specified but no match is found in LOD reference list (examples) -: ['http://schema.datacite.org/meta/kernel-4.1/metadata.xsd', 'http://www.openarchives.org/OAI/2.0/oai_dc.xsd', 'http://datacite.org/schema', 'http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd', 'http://schema.datacite.org/meta/kernel-3/metadata.xsd']

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

[
    {
        "related_resource": "10.5281\/zenodo.6460189",
        "relation_type": "IsVersionOf"
    },
    {
        "related_resource": "https:\/\/zenodo.org\/communities\/bbce",
        "relation_type": "IsPartOf"
    }
]

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-I3-01M-1

Related resources are explicitly mentioned in metadata

FsF-I3-01M-2

Related resources are indicated by machine readable links or identifiers

Debug messages:

Level:	Message:
INFO	No related resource(s) found in Schema.org metadata
INFO	No related resource(s) found in DublinCore metadata
INFO	2 related resource(s) extracted from -: Schema.org JSON-LD (Negotiated)
INFO	2 related resource(s) extracted from -: Datacite Search
INFO	Total number of related resources extracted -: 2
SUCCESS	Number of related resources after QC step -: 2

Reusable

FAIR level:

2 of 3

moderate

Score:

1 of 4

Output:

{
    "data_content_descriptor": [
        {
            "descriptor": "file type",
            "descriptor_value": "zip",
            "matches_content": false
        }
    ],
    "object_type": "dataset"
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-R1-01MD-1

Minimal information about available data content is given in metadata

Resource type (e.g. dataset) is given in metadata

Information about data content (e.g. links) is given in metadata

FsF-R1-01MD-2

Verifiable data descriptors (file info, measured variables or observation types) are specified in metadata

File size and type information are specified in metadata

Measured variables or observation types are specified in metadata

FsF-R1-01MD-3

Data content matches file type and size specified in metadata

FsF-R1-01MD-4

Data content matches measured variables or observation types specified in metadata

Debug messages:

Level:	Message:
INFO	Object landing page accessible status -: True
SUCCESS	Resource type specified -: dataset
INFO	Number of data content URI(s) specified -: 5
INFO	Selected content file to be analyzed -: https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/Figs.zip
INFO	Successfully parsed data object file using TIKA
INFO	File request status code -: 200
INFO	Succesfully parsed data file(s) -: https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/Figs.zip
WARNING	Could not verify content type from downloaded file -: (expected: zip, found: ['application/zip', 'application/pdf'])
WARNING	NO info about file size available in given metadata -:
WARNING	NO measured variables found in metadata, skip 'measured_variable' test.
WARNING	Measured variables given in metadata do not match data object content

FAIR level:

3 of 3

advanced

Score:

2 of 2

Output:

[
    {
        "details_url": "http:\/\/spdx.org\/licenses\/CC-BY-4.0.html",
        "license": "https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode",
        "osi_approved": false
    }
]

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-R1.1-01M-1

Licence information is given in an appropriate metadata element

FsF-R1.1-01M-2

Recognized licence is valid and registered at SPDX

Debug messages:

Level:	Message:
INFO	License metadata found (schema.org) -: https://creativecommons.org/licenses/by/4.0/legalcode
INFO	License metadata found (schema.org) -: ['https://creativecommons.org/licenses/by/4.0/legalcode', 'info:eu-repo/semantics/openAccess']
INFO	License expressed as access condition (rights), therefore moved from FsF-A1-01M -: https://creativecommons.org/licenses/by/4.0/legalcode
SUCCESS	Found licence information in metadata
INFO	Verify URL through SPDX registry -: https://creativecommons.org/licenses/by/4.0/legalcode
INFO	Found SPDX license representation -: http://spdx.org/licenses/CC-BY-4.0.json
SUCCESS	Found SPDX license representation (spdx url, osi_approved)

FAIR level:

2 of 3

moderate

Score:

1 of 2

Output:

{
    "provenance_metadata_included": {
        "is_available": true,
        "provenance_metadata": [
            {
                "metadata_element": "publication_date",
                "metadata_value": "2022-04-14",
                "prov_o_mapping": "prov:generatedAtTime"
            },
            {
                "metadata_element": "creator",
                "metadata_value": [
                    "Sergio E Uribe",
                    "Ahmad Sofi-Mahmudi",
                    "Eero Raittio",
                    "Ilze Maldupa",
                    "Baiba Vilne"
                ],
                "prov_o_mapping": "prov:wasAttributedTo"
            },
            {
                "metadata_element": "publisher",
                "metadata_value": "Zenodo",
                "prov_o_mapping": "prov:wasAttributedTo"
            }
        ]
    },
    "structured_provenance_available": {
        "is_available": false,
        "provenance_metadata": []
    }
}

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-R1.2-01M-1

Metadata contains elements which hold provenance information and can be mapped to PROV

FsF-R1.2-01M-2

Metadata contains provenance information using formal provenance ontologies (PROV-O)

Debug messages:

Level:	Message:
INFO	Check if provenance information is available in descriptive metadata
INFO	Check if provenance information is available in metadata about related resources
SUCCESS	Found data creation-related provenance information
INFO	Check if provenance specific namespaces are listed in metadata
WARNING	Formal provenance metadata is unavailable

FAIR level:

3 of 3

advanced

Score:

1 of 1

Output:

[
    {
        "metadata_standard": "DataCite Metadata Schema",
        "subject_areas": [
            "Multidisciplinary"
        ],
        "urls": [
            "http:\/\/schema.datacite.org\/meta\/kernel-4.1\/metadata.xsd"
        ]
    },
    {
        "metadata_standard": "DataCite Metadata Schema",
        "subject_areas": [
            "Multidisciplinary"
        ],
        "urls": [
            "http:\/\/datacite.org\/schema\/"
        ]
    },
    {
        "metadata_standard": "Dublin Core",
        "subject_areas": [
            "Multidisciplinary"
        ],
        "urls": [
            "http:\/\/purl.org\/dc\/elements\/1.1\/"
        ]
    },
    {
        "metadata_standard": "MARC (Machine-Readable Cataloging)",
        "subject_areas": [
            "Bibliographic standards",
            "Information\/library standards"
        ],
        "urls": [
            "http:\/\/www.loc.gov\/standards\/marcxml\/schema\/MARC21slim.xsd"
        ]
    },
    {
        "metadata_standard": "DataCite Metadata Schema",
        "subject_areas": [
            "Multidisciplinary"
        ],
        "urls": [
            "http:\/\/schema.datacite.org\/meta\/kernel-3\/metadata.xsd"
        ]
    },
    {
        "metadata_standard": "DataCite Metadata Schema",
        "subject_areas": [
            "Multidisciplinary"
        ],
        "urls": [
            "http:\/\/schema.datacite.org"
        ]
    },
    {
        "metadata_standard": "Dublin Core",
        "subject_areas": [
            "Multidisciplinary"
        ],
        "urls": [
            "http:\/\/dublincore.org\/specifications\/"
        ]
    }
]

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-R1.3-01M-1

Community specific metadata standard is detected using namespaces or schemas found in provided metadata or metadata services outputs

FsF-R1.3-01M-2

Community specific metadata standard is listed in the re3data record of the responsible repository

FsF-R1.3-01M-3

Multidisciplinary but community endorsed metadata (RDA Metadata Standards Catalog) standard is listed in the re3data record or detected by namespace

Debug messages:

Level:	Message:
INFO	Retrieving API and Standards
INFO	re3data/datacite client id -: cern.zenodo
INFO	Trying to retrieve metadata info from re3data/datacite services using client id -: cern.zenodo
INFO	Found match re3data (DOI-based) record
INFO	Found match re3data metadata record -: https://www.re3data.org/api/beta/repository/r3d100010468
INFO	Inferring endpoint information through re3data/datacite services
INFO	Metadata standards listed in re3data record -: ['DataCite Metadata Schema', 'Dublin Core']
INFO	Use OAI-PMH endpoint to retrieve standards used by the repository -: https://zenodo.org/oai2d
INFO	Retrieving page -: https://zenodo.org/oai2d?verb=ListMetadataFormats as application/xml, text/xml;q=0.5
INFO	Content negotiation accept=application/xml, text/xml;q=0.5, status=200
INFO	Using Cached response content
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: oai_datacite4
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: oai_dc
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: dcat
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: oai_datacite
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: datacite
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: datacite3
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: datacite4
INFO	Skipped domain-agnostic standard listed in OAI-PMH endpoint -: oai_datacite3
SUCCESS	Found disciplinary standards that are listed in OAI-PMH endpoint -: ['marcxml', 'marc21']
INFO	Namespaces included in the metadata -: ['http://schema.datacite.org/meta/kernel-4.1/metadata.xsd', 'http://www.openarchives.org/OAI/2.0/oai_dc.xsd', 'http://ogp.me/ns#', 'http://schema.org/', 'http://datacite.org/schema/', 'http://purl.org/dc/elements/1.1/', 'http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd', 'http://schema.datacite.org/meta/kernel-3/metadata.xsd']
INFO	Found non-disciplinary standard (but RDA listed) found through namespaces -: DataCite Metadata Schema (http://schema.datacite.org/meta/kernel-4.1/metadata.xsd)
INFO	Found non-disciplinary standard (but RDA listed) found through namespaces -: DataCite Metadata Schema (http://datacite.org/schema/)
INFO	Found non-disciplinary standard (but RDA listed) found through namespaces -: Dublin Core (http://purl.org/dc/elements/1.1/)
SUCCESS	Found disciplinary standard through namespaces -: http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd
INFO	Found non-disciplinary standard (but RDA listed) found through namespaces -: DataCite Metadata Schema (http://schema.datacite.org/meta/kernel-3/metadata.xsd)
INFO	The following standards found through namespaces are excluded as they are not listed in RDA metadata catalog -: ['http://www.openarchives.org/OAI/2.0/oai_dc.xsd', 'http://ogp.me/ns#', 'http://schema.org/']
INFO	Using re3data to detect metadata standard(s)
INFO	Found non-disciplinary standard (but RDA listed) found through re3data -: DataCite Metadata Schema
INFO	Found non-disciplinary standard (but RDA listed) found through re3data -: Dublin Core

FAIR level:

2 of 3

moderate

Score:

1 of 1

Output:

[
    {
        "file_uri": "https:\/\/zenodo.org\/api\/files\/78079f6e-2c8a-400d-b51f-fbd554d73a6e\/00-README.txt",
        "is_preferred_format": false,
        "mime_type": "txt",
        "preference_reason": [],
        "subject_areas": []
    },
    {
        "file_uri": "https:\/\/zenodo.org\/api\/files\/78079f6e-2c8a-400d-b51f-fbd554d73a6e\/00-README.txt",
        "is_preferred_format": false,
        "mime_type": "application\/zip",
        "preference_reason": [],
        "subject_areas": []
    },
    {
        "file_uri": "https:\/\/zenodo.org\/api\/files\/78079f6e-2c8a-400d-b51f-fbd554d73a6e\/00-README.txt",
        "is_preferred_format": true,
        "mime_type": "application\/pdf",
        "preference_reason": [
            "long term format"
        ],
        "subject_areas": [
            "General"
        ]
    },
    {
        "file_uri": "https:\/\/zenodo.org\/api\/files\/78079f6e-2c8a-400d-b51f-fbd554d73a6e\/01-analysis-script-fairness-dental-publications-2016-2021.Rmd",
        "is_preferred_format": false,
        "mime_type": "rmd",
        "preference_reason": [],
        "subject_areas": []
    },
    {
        "file_uri": "https:\/\/zenodo.org\/api\/files\/78079f6e-2c8a-400d-b51f-fbd554d73a6e\/03-codebook-dental-publications-fairness.csv",
        "is_preferred_format": false,
        "mime_type": "csv",
        "preference_reason": [],
        "subject_areas": []
    },
    {
        "file_uri": "https:\/\/zenodo.org\/api\/files\/78079f6e-2c8a-400d-b51f-fbd554d73a6e\/Figs.zip",
        "is_preferred_format": false,
        "mime_type": "zip",
        "preference_reason": [],
        "subject_areas": []
    }
]

Metric tests:

Test:

Test name:

Score:

Maturity:

Result:

FsF-R1.3-02D-1

The format of a data file given in the metadata is listed in the long term file formats, open file formats or scientific file formats controlled list

The format of the data file is an open format

The format of the data file is a long term format

The format of the data file is a scientific format

Debug messages:

Level:	Message:
INFO	Data content identifier provided -: ['https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/00-README.txt', 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/01-analysis-script-fairness-dental-publications-2016-2021.Rmd', 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/02-data-dental-publications-fairness-2016-2021.csv', 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/03-codebook-dental-publications-fairness.csv', 'https://zenodo.org/api/files/78079f6e-2c8a-400d-b51f-fbd554d73a6e/Figs.zip']
SUCCESS	Could identify a file format commonly used by the scientific community -:zip

Results

Disclaimer:

Assessment Results (saved at 2022-06-07 21:51:08):

Evaluated Resource:

Dataset Dental research data availability and quality according to FAIR principles

advanced

Summary:

advanced

advanced

moderate

moderate

Report:

Findable

FsF-F1-01D - Data is assigned a globally unique identifier.

FsF-F1-02D - Data is assigned a persistent identifier.

FsF-F2-01M - Metadata includes descriptive core elements (creator, title, data identifier, publisher, publication date, summary and keywords) to support data findability.

FsF-F3-01M - Metadata includes the identifier of the data it describes.

FsF-F4-01M - Metadata is offered in such a way that it can be retrieved programmatically.

Accessible

FsF-A1-01M - Metadata contains access level and access conditions of the data.

FsF-A1-03D - Data is accessible through a standardized communication protocol.

FsF-A1-02M - Metadata is accessible through a standardized communication protocol.

Interoperable

FsF-I1-01M - Metadata is represented using a formal knowledge representation language.

FsF-I1-02M - Metadata uses semantic resources

FsF-I3-01M - Metadata includes links between the data and its related entities.

Reusable

FsF-R1-01MD - Metadata specifies the content of the data.

FsF-R1.1-01M - Metadata includes license information under which data can be reused.

FsF-R1.2-01M - Metadata includes provenance information about data creation or generation.

FsF-R1.3-01M - Metadata follows a standard recommended by the target research community of the data.

FsF-R1.3-02D - Data is available in a file format recommended by the target research community.